IL_7SYR_092

3D structure

PDB id

7SYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES eIF2-containing 48S initiation complex, closed conformation. Structure 12(wt).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CCC*GAG

Length

6 nucleotides

Bulged bases

7SYR|1|2|A|1781

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYR_092 not in the Motif Atlas

Geometric match to IL_5TBW_375

Geometric discrepancy: 0.3254

The information below is about IL_5TBW_375

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_05035.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

38

Unit IDs

7SYR|1|2|C|1751
7SYR|1|2|C|1752
7SYR|1|2|C|1753
*
7SYR|1|2|G|1780
7SYR|1|2|A|1781
7SYR|1|2|G|1782

Current chains

Chain 2

18S rRNA

Nearby chains

Chain H

eS6