IL_7SYR_110

3D structure

PDB id

7SYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES eIF2-containing 48S initiation complex, closed conformation. Structure 12(wt).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GCUCAGCGUG*CCGUUGAACCC

Length

21 nucleotides

Bulged bases

7SYR|1|2|U|1585, 7SYR|1|2|G|1587

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYR|1|2|G|1541
7SYR|1|2|C|1542
7SYR|1|2|U|1543
7SYR|1|2|C|1544
7SYR|1|2|A|1545
7SYR|1|2|G|1546
7SYR|1|2|C|1547
7SYR|1|2|G|1548
7SYR|1|2|U|1549
7SYR|1|2|G|1550
*
7SYR|1|2|C|1582
7SYR|1|2|C|1583
7SYR|1|2|G|1584
7SYR|1|2|U|1585
7SYR|1|2|U|1586
7SYR|1|2|G|1587
7SYR|1|2|A|1588
7SYR|1|2|A|1589
7SYR|1|2|C|1590
7SYR|1|2|C|1591
7SYR|1|2|C|1592

Current chains

Chain 2

18S rRNA

Nearby chains

Chain E

uS3

Chain G

uS7

Chain R

uS9

Chain U

eS19

Chain V

uS10

Chain a

eS25

Chain e

uS14