IL_7SYS_028

3D structure

PDB id

7SYS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the delta dII IRES eIF2-containing 48S initiation complex, closed conformation. Structure 12(delta dII).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AUA*UAAU

Length

7 nucleotides

Bulged bases

7SYS|1|2|A|555

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYS_028 not in the Motif Atlas

Geometric match to IL_7A0S_092

Geometric discrepancy: 0.3519

The information below is about IL_7A0S_092

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_10892.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

58

Unit IDs

7SYS|1|2|A|529
7SYS|1|2|U|530
7SYS|1|2|A|531
*
7SYS|1|2|U|553
7SYS|1|2|A|554
7SYS|1|2|A|555
7SYS|1|2|U|556

Current chains

Chain 2

18S rRNA

Nearby chains

Chain K

uS4

Chain f

eS30