3D structure

PDB id
7SYS (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the delta dII IRES eIF2-containing 48S initiation complex, closed conformation. Structure 12(delta dII).
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
AGGGCAAGUC*GCU
Length
13 nucleotides
Bulged bases
7SYS|1|2|U|607
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

7SYS|1|2|A|599
7SYS|1|2|G|600
7SYS|1|2|G|601
7SYS|1|2|G|602
7SYS|1|2|C|603
7SYS|1|2|A|604
7SYS|1|2|A|605
7SYS|1|2|G|606
7SYS|1|2|U|607
7SYS|1|2|C|608
*
7SYS|1|2|G|635
7SYS|1|2|C|636
7SYS|1|2|U|637

Current chains

Chain 2
18S rRNA

Nearby chains

Chain D
uS5
Chain E
uS3
Chain K
uS4
Chain f
eS30
Chain z
Internal ribosome entry site; IRES

Coloring options:

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