IL_7SYS_107

3D structure

PDB id

7SYS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the delta dII IRES eIF2-containing 48S initiation complex, closed conformation. Structure 12(delta dII).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GCUCAGCGUG*CCGUUGAACCC

Length

21 nucleotides

Bulged bases

7SYS|1|2|U|1585, 7SYS|1|2|G|1587

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYS|1|2|G|1541
7SYS|1|2|C|1542
7SYS|1|2|U|1543
7SYS|1|2|C|1544
7SYS|1|2|A|1545
7SYS|1|2|G|1546
7SYS|1|2|C|1547
7SYS|1|2|G|1548
7SYS|1|2|U|1549
7SYS|1|2|G|1550
*
7SYS|1|2|C|1582
7SYS|1|2|C|1583
7SYS|1|2|G|1584
7SYS|1|2|U|1585
7SYS|1|2|U|1586
7SYS|1|2|G|1587
7SYS|1|2|A|1588
7SYS|1|2|A|1589
7SYS|1|2|C|1590
7SYS|1|2|C|1591
7SYS|1|2|C|1592

Current chains

Chain 2

18S rRNA

Nearby chains

Chain E

uS3

Chain G

uS7

Chain R

uS9

Chain U

eS19

Chain V

uS10

Chain a

eS25

Chain e

uS14