IL_7SYT_060

3D structure

PDB id

7SYT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES w/o eIF2 48S initiation complex, closed conformation. Structure 13(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

CCU*GCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYT_060 not in the Motif Atlas

Geometric match to IL_4V88_444

Geometric discrepancy: 0.1299

The information below is about IL_4V88_444

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

7SYT|1|2|C|1230
7SYT|1|2|C|1231
7SYT|1|2|U|1232
*
7SYT|1|2|G|1526
7SYT|1|2|C|1527
7SYT|1|2|G|1528

Current chains

Chain 2

18S rRNA

Nearby chains

Chain R

uS9

Chain T

uS13

Chain U

eS19

Chain V

uS10

Chain i

Transfer RNA; tRNA