IL_7SYT_062

3D structure

PDB id

7SYT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES w/o eIF2 48S initiation complex, closed conformation. Structure 13(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

GCCC*GUC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYT_062 not in the Motif Atlas

Geometric match to IL_4N0T_004

Geometric discrepancy: 0.3166

The information below is about IL_4N0T_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32983.2

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

8

Unit IDs

7SYT|1|2|G|1270
7SYT|1|2|C|1271
7SYT|1|2|C|1272
7SYT|1|2|C|1273
*
7SYT|1|2|G|1510
7SYT|1|2|U|1511
7SYT|1|2|C|1512

Current chains

Chain 2

18S rRNA

Nearby chains

Chain L

S10_plectin domain-containing protein

Chain e

eS29

Chain g

40S ribosomal protein S27a