IL_7SYT_078

3D structure

PDB id

7SYT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES w/o eIF2 48S initiation complex, closed conformation. Structure 13(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

GGGAUCG*CAUGAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYT_078 not in the Motif Atlas

Homologous match to IL_8C3A_469

Geometric discrepancy: 0.1427

The information below is about IL_8C3A_469

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_10092.1

Basepair signature

cWW-tSH-tSH-L-R-cWW-L-R-cWW

Number of instances in this motif group

1

Unit IDs

7SYT|1|2|G|1604
7SYT|1|2|G|1605
7SYT|1|2|G|1606
7SYT|1|2|A|1607
7SYT|1|2|U|1608
7SYT|1|2|C|1609
7SYT|1|2|G|1610
*
7SYT|1|2|C|1629
7SYT|1|2|A|1630
7SYT|1|2|U|1631
7SYT|1|2|G|1632
7SYT|1|2|A|1633
7SYT|1|2|A|1634
7SYT|1|2|C|1635

Current chains

Chain 2

18S rRNA

Nearby chains

Chain T

uS13

Chain U

eS19