IL_7SYT_085

3D structure

PDB id

7SYT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES w/o eIF2 48S initiation complex, closed conformation. Structure 13(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

UUA*UUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYT_085 not in the Motif Atlas

Geometric match to IL_5TBW_016

Geometric discrepancy: 0.1684

The information below is about IL_5TBW_016

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

7SYT|1|2|U|1729
7SYT|1|2|U|1730
7SYT|1|2|A|1731
*
7SYT|1|2|U|1803
7SYT|1|2|U|1804
7SYT|1|2|G|1805

Current chains

Chain 2

18S rRNA

Nearby chains

Chain J

eS8