IL_7SYT_097

3D structure

PDB id

7SYT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES w/o eIF2 48S initiation complex, closed conformation. Structure 13(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

GGGA*UACC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYT_097 not in the Motif Atlas

Geometric match to IL_5LQT_002

Geometric discrepancy: 0.3341

The information below is about IL_5LQT_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

7SYT|1|2|G|436
7SYT|1|2|G|437
7SYT|1|2|G|438
7SYT|1|2|A|439
*
7SYT|1|2|U|454
7SYT|1|2|A|455
7SYT|1|2|C|456
7SYT|1|2|C|457

Current chains

Chain 2

18S rRNA

Nearby chains

Chain H

eS6

Chain J

eS8