IL_7SYT_105

3D structure

PDB id

7SYT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES w/o eIF2 48S initiation complex, closed conformation. Structure 13(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

ACUAG*CUUCU

Length

10 nucleotides

Bulged bases

7SYT|1|2|C|1403, 7SYT|1|2|U|1404

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYT_105 not in the Motif Atlas

Homologous match to IL_8CRE_459

Geometric discrepancy: 0.3537

The information below is about IL_8CRE_459

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYT|1|2|A|1402
7SYT|1|2|C|1403
7SYT|1|2|U|1404
7SYT|1|2|A|1405
7SYT|1|2|G|1406
*
7SYT|1|2|C|1440
7SYT|1|2|U|1441
7SYT|1|2|U|1442
7SYT|1|2|C|1443
7SYT|1|2|U|1444

Current chains

Chain 2

18S rRNA

Nearby chains

Chain R

uS9

Chain V

uS10

Chain h

RACK1