IL_7SYU_012

3D structure

PDB id

7SYU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the delta dII IRES w/o eIF2 48S initiation complex, closed conformation. Structure 13(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GACUU*AUGCCGAC

Length

13 nucleotides

Bulged bases

7SYU|1|2|C|142, 7SYU|1|2|U|143

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYU|1|2|G|130
7SYU|1|2|A|141
7SYU|1|2|C|142
7SYU|1|2|U|143
7SYU|1|2|U|144
*
7SYU|1|2|A|175
7SYU|1|2|U|176
7SYU|1|2|G|177
7SYU|1|2|C|178
7SYU|1|2|C|179
7SYU|1|2|G|180
7SYU|1|2|A|181
7SYU|1|2|C|182

Current chains

Chain 2

18S rRNA

Nearby chains

Chain H

eS6