IL_7SYU_014

3D structure

PDB id

7SYU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the delta dII IRES w/o eIF2 48S initiation complex, closed conformation. Structure 13(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

UGUG*UAGA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYU_014 not in the Motif Atlas

Homologous match to IL_8C3A_403

Geometric discrepancy: 0.5397

The information below is about IL_8C3A_403

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86374.1

Basepair signature

cWW-L-R-L-R-cWW

Number of instances in this motif group

5

Unit IDs

7SYU|1|2|U|152
7SYU|1|2|G|153
7SYU|1|2|U|154
7SYU|1|2|G|155
*
7SYU|1|2|U|163
7SYU|1|2|A|164
7SYU|1|2|G|165
7SYU|1|2|A|166

Current chains

Chain 2

18S rRNA

Nearby chains

Chain H

eS6

Chain Z

40S ribosomal protein S24