IL_7SYU_031

3D structure

PDB id

7SYU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the delta dII IRES w/o eIF2 48S initiation complex, closed conformation. Structure 13(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GAG*CGAGGAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYU_031 not in the Motif Atlas

Homologous match to IL_8C3A_420

Geometric discrepancy: 0.3106

The information below is about IL_8C3A_420

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_14882.1

Basepair signature

cWW-tSH-L-cWW-L-L-R-L

Number of instances in this motif group

1

Unit IDs

7SYU|1|2|G|563
7SYU|1|2|A|564
7SYU|1|2|G|565
*
7SYU|1|2|C|585
7SYU|1|2|G|586
7SYU|1|2|A|587
7SYU|1|2|G|588
7SYU|1|2|G|589
7SYU|1|2|A|590
7SYU|1|2|U|591
7SYU|1|2|C|592

Current chains

Chain 2

18S rRNA

Nearby chains

Chain K

uS4

Chain f

eS30