IL_7SYU_089

3D structure

PDB id

7SYU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the delta dII IRES w/o eIF2 48S initiation complex, closed conformation. Structure 13(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CCC*GAG

Length

6 nucleotides

Bulged bases

7SYU|1|2|A|1781

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYU_089 not in the Motif Atlas

Geometric match to IL_7A0S_005

Geometric discrepancy: 0.3187

The information below is about IL_7A0S_005

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

54

Unit IDs

7SYU|1|2|C|1751
7SYU|1|2|C|1752
7SYU|1|2|C|1753
*
7SYU|1|2|G|1780
7SYU|1|2|A|1781
7SYU|1|2|G|1782

Current chains

Chain 2

18S rRNA

Nearby chains

Chain H

eS6