IL_7SYU_093

3D structure

PDB id

7SYU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the delta dII IRES w/o eIF2 48S initiation complex, closed conformation. Structure 13(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CGAGUAG*CGAAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYU|1|z|C|255
7SYU|1|z|G|256
7SYU|1|z|A|257
7SYU|1|z|G|258
7SYU|1|z|U|259
7SYU|1|z|A|260
7SYU|1|z|G|261
*
7SYU|1|z|C|272
7SYU|1|z|G|273
7SYU|1|z|A|274
7SYU|1|z|A|275
7SYU|1|z|A|276
7SYU|1|z|G|277

Current chains

Chain z

HCV IRES

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA