IL_7SYU_098

3D structure

PDB id

7SYU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the delta dII IRES w/o eIF2 48S initiation complex, closed conformation. Structure 13(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GAGGGCAAGUC*GCUC

Length

15 nucleotides

Bulged bases

7SYU|1|2|U|607

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYU|1|2|G|598
7SYU|1|2|A|599
7SYU|1|2|G|600
7SYU|1|2|G|601
7SYU|1|2|G|602
7SYU|1|2|C|603
7SYU|1|2|A|604
7SYU|1|2|A|605
7SYU|1|2|G|606
7SYU|1|2|U|607
7SYU|1|2|C|608
*
7SYU|1|2|G|635
7SYU|1|2|C|636
7SYU|1|2|U|637
7SYU|1|2|C|638

Current chains

Chain 2

18S rRNA

Nearby chains

Chain D

uS5 (S2)

Chain E

uS3

Chain K

uS4

Chain Y

uS12

Chain f

eS30

Chain z

Internal ribosome entry site; IRES