IL_7SYU_105

3D structure

PDB id

7SYU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the delta dII IRES w/o eIF2 48S initiation complex, closed conformation. Structure 13(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

ACUAG*CUUCU

Length

10 nucleotides

Bulged bases

7SYU|1|2|C|1403, 7SYU|1|2|U|1404

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYU_105 not in the Motif Atlas

Homologous match to IL_8CRE_459

Geometric discrepancy: 0.3531

The information below is about IL_8CRE_459

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYU|1|2|A|1402
7SYU|1|2|C|1403
7SYU|1|2|U|1404
7SYU|1|2|A|1405
7SYU|1|2|G|1406
*
7SYU|1|2|C|1440
7SYU|1|2|U|1441
7SYU|1|2|U|1442
7SYU|1|2|C|1443
7SYU|1|2|U|1444

Current chains

Chain 2

18S rRNA

Nearby chains

Chain R

uS9

Chain V

uS10

Chain h

RACK1