IL_7SYW_012

3D structure

PDB id

7SYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES eIF5B-containing 48S initiation complex, closed conformation. Structure 15(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GACUU*AUGCCGAC

Length

13 nucleotides

Bulged bases

7SYW|1|2|C|142, 7SYW|1|2|U|143

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYW|1|2|G|130
7SYW|1|2|A|141
7SYW|1|2|C|142
7SYW|1|2|U|143
7SYW|1|2|U|144
*
7SYW|1|2|A|175
7SYW|1|2|U|176
7SYW|1|2|G|177
7SYW|1|2|C|178
7SYW|1|2|C|179
7SYW|1|2|G|180
7SYW|1|2|A|181
7SYW|1|2|C|182

Current chains

Chain 2

18S rRNA

Nearby chains

Chain H

eS6