IL_7SYW_025

3D structure

PDB id

7SYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES eIF5B-containing 48S initiation complex, closed conformation. Structure 15(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UUA*UA

Length

5 nucleotides

Bulged bases

7SYW|1|2|U|488

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYW_025 not in the Motif Atlas

Geometric match to IL_3D2V_001

Geometric discrepancy: 0.2401

The information below is about IL_3D2V_001

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

148

Unit IDs

7SYW|1|2|U|487
7SYW|1|2|U|488
7SYW|1|2|A|489
*
7SYW|1|2|U|511
7SYW|1|2|A|512

Current chains

Chain 2

18S rRNA

Nearby chains

Chain F

40S ribosomal protein S4

Chain K

uS4

Chain Z

40S ribosomal protein S24

Chain x

Eukaryotic translation initiation factor 5B