IL_7SYW_045

3D structure

PDB id

7SYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES eIF5B-containing 48S initiation complex, closed conformation. Structure 15(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGC*GAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYW_045 not in the Motif Atlas

Geometric match to IL_3DIL_006

Geometric discrepancy: 0.1968

The information below is about IL_3DIL_006

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

215

Unit IDs

7SYW|1|2|C|877
7SYW|1|2|G|878
7SYW|1|2|C|879
*
7SYW|1|2|G|907
7SYW|1|2|A|908
7SYW|1|2|G|909

Current chains

Chain 2

18S rRNA

Nearby chains