IL_7SYW_064

3D structure

PDB id

7SYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES eIF5B-containing 48S initiation complex, closed conformation. Structure 15(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AUUGACAG*CUUUCUCGAU

Length

18 nucleotides

Bulged bases

7SYW|1|2|C|1292

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYW|1|2|A|1287
7SYW|1|2|U|1288
7SYW|1|2|U|1289
7SYW|1|2|G|1290
7SYW|1|2|A|1291
7SYW|1|2|C|1292
7SYW|1|2|A|1293
7SYW|1|2|G|1294
*
7SYW|1|2|C|1305
7SYW|1|2|U|1306
7SYW|1|2|U|1307
7SYW|1|2|U|1308
7SYW|1|2|C|1309
7SYW|1|2|U|1310
7SYW|1|2|C|1311
7SYW|1|2|G|1312
7SYW|1|2|A|1313
7SYW|1|2|U|1314

Current chains

Chain 2

18S rRNA

Nearby chains

Chain L

eS10

Chain N

eS12

Chain Q

uS19

Chain e

eS29

Chain g

40S ribosomal protein S27a