IL_7SYW_066
3D structure
- PDB id
- 7SYW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the wt IRES eIF5B-containing 48S initiation complex, closed conformation. Structure 15(wt)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- UGCAU*AUG
- Length
- 8 nucleotides
- Bulged bases
- 7SYW|1|2|C|1331
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7SYW_066 not in the Motif Atlas
- Geometric match to IL_4LFB_044
- Geometric discrepancy: 0.1601
- The information below is about IL_4LFB_044
- Detailed Annotation
- Isolated cWS basepair
- Broad Annotation
- No text annotation
- Motif group
- IL_82453.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 5
Unit IDs
7SYW|1|2|U|1329
7SYW|1|2|G|1330
7SYW|1|2|C|1331
7SYW|1|2|A|1332
7SYW|1|2|U|1333
*
7SYW|1|2|A|1498
7SYW|1|2|U|1499
7SYW|1|2|G|1500
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain A
- Eukaryotic translation initiation factor 1A, X-chromosomal
- Chain E
- uS3
- Chain L
- eS10
- Chain V
- uS10
- Chain e
- eS29
- Chain z
- Internal ribosome entry site; IRES
Coloring options: