IL_7SYW_071
3D structure
- PDB id
- 7SYW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the wt IRES eIF5B-containing 48S initiation complex, closed conformation. Structure 15(wt)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CAUGC*GAGG
- Length
- 9 nucleotides
- Bulged bases
- 7SYW|1|2|U|1397
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7SYW_071 not in the Motif Atlas
- Geometric match to IL_3CUL_002
- Geometric discrepancy: 0.363
- The information below is about IL_3CUL_002
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_30621.4
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 66
Unit IDs
7SYW|1|2|C|1395
7SYW|1|2|A|1396
7SYW|1|2|U|1397
7SYW|1|2|G|1398
7SYW|1|2|C|1399
*
7SYW|1|2|G|1447
7SYW|1|2|A|1448
7SYW|1|2|G|1449
7SYW|1|2|G|1450
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain R
- uS9
- Chain S
- eS17
- Chain V
- uS10
- Chain h
- RACK1
Coloring options: