IL_7SYX_003

3D structure

PDB id

7SYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the delta dII IRES eIF5B-containing 48S initiation complex, closed conformation. Structure 15(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CAAA*UGACG

Length

9 nucleotides

Bulged bases

7SYX|1|2|A|516

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYX_003 not in the Motif Atlas

Geometric match to IL_4WF9_016

Geometric discrepancy: 0.3403

The information below is about IL_4WF9_016

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.2

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

43

Unit IDs

7SYX|1|2|C|37
7SYX|1|2|A|38
7SYX|1|2|A|39
7SYX|1|2|A|40
*
7SYX|1|2|U|514
7SYX|1|2|G|515
7SYX|1|2|A|516
7SYX|1|2|C|517
7SYX|1|2|G|518

Current chains

Chain 2

18S rRNA

Nearby chains

Chain F

eS4

Chain K

uS4

Chain x

Eukaryotic translation initiation factor 5B