IL_7SYX_011

3D structure

PDB id

7SYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the delta dII IRES eIF5B-containing 48S initiation complex, closed conformation. Structure 15(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UCCUUU*AUUCG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYX_011 not in the Motif Atlas

Geometric match to IL_4V88_393

Geometric discrepancy: 0.2377

The information below is about IL_4V88_393

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37842.2

Basepair signature

cWW-cWW-L-R-cWW-cWW-R-L

Number of instances in this motif group

4

Unit IDs

7SYX|1|2|U|116
7SYX|1|2|C|117
7SYX|1|2|C|118
7SYX|1|2|U|119
7SYX|1|2|U|120
7SYX|1|2|U|121
*
7SYX|1|2|A|343
7SYX|1|2|U|344
7SYX|1|2|U|345
7SYX|1|2|C|346
7SYX|1|2|G|347

Current chains

Chain 2

18S rRNA

Nearby chains

Chain F

eS4

Chain J

eS8