IL_7SYX_015

3D structure

PDB id

7SYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the delta dII IRES eIF5B-containing 48S initiation complex, closed conformation. Structure 15(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUGAC*GGAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYX_015 not in the Motif Atlas

Geometric match to IL_4V9F_085

Geometric discrepancy: 0.2764

The information below is about IL_4V9F_085

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_87767.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

7SYX|1|2|C|188
7SYX|1|2|U|189
7SYX|1|2|G|190
7SYX|1|2|A|191
7SYX|1|2|C|192
*
7SYX|1|2|G|207
7SYX|1|2|G|208
7SYX|1|2|A|209
7SYX|1|2|U|210
7SYX|1|2|G|211

Current chains

Chain 2

18S rRNA

Nearby chains

Chain J

eS8