IL_7SYX_029

3D structure

PDB id

7SYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the delta dII IRES eIF5B-containing 48S initiation complex, closed conformation. Structure 15(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AUA*UAAU

Length

7 nucleotides

Bulged bases

7SYX|1|2|A|555

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYX_029 not in the Motif Atlas

Geometric match to IL_2O3X_003

Geometric discrepancy: 0.323

The information below is about IL_2O3X_003

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

7SYX|1|2|A|529
7SYX|1|2|U|530
7SYX|1|2|A|531
*
7SYX|1|2|U|553
7SYX|1|2|A|554
7SYX|1|2|A|555
7SYX|1|2|U|556

Current chains

Chain 2

18S rRNA

Nearby chains

Chain f

eS30