IL_7SYX_032

3D structure

PDB id

7SYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the delta dII IRES eIF5B-containing 48S initiation complex, closed conformation. Structure 15(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAG*CGAGGAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYX_032 not in the Motif Atlas

Homologous match to IL_8C3A_420

Geometric discrepancy: 0.2393

The information below is about IL_8C3A_420

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_14882.1

Basepair signature

cWW-tSH-L-cWW-L-L-R-L

Number of instances in this motif group

1

Unit IDs

7SYX|1|2|G|563
7SYX|1|2|A|564
7SYX|1|2|G|565
*
7SYX|1|2|C|585
7SYX|1|2|G|586
7SYX|1|2|A|587
7SYX|1|2|G|588
7SYX|1|2|G|589
7SYX|1|2|A|590
7SYX|1|2|U|591
7SYX|1|2|C|592

Current chains

Chain 2

18S rRNA

Nearby chains

Chain K

uS4

Chain f

eS30

Chain x

Eukaryotic translation initiation factor 5B