IL_7SYX_058
3D structure
- PDB id
- 7SYX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the delta dII IRES eIF5B-containing 48S initiation complex, closed conformation. Structure 15(delta dII)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CGAUGC*GGGCAG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7SYX_058 not in the Motif Atlas
- Geometric match to IL_6O5F_001
- Geometric discrepancy: 0.3507
- The information below is about IL_6O5F_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_31007.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 5
Unit IDs
7SYX|1|2|C|1098
7SYX|1|2|G|1099
7SYX|1|2|A|1100
7SYX|1|2|U|1101
7SYX|1|2|G|1102
7SYX|1|2|C|1103
*
7SYX|1|2|G|1129
7SYX|1|2|G|1130
7SYX|1|2|G|1131
7SYX|1|2|C|1132
7SYX|1|2|A|1133
7SYX|1|2|G|1134
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain B
- uS2
- Chain C
- eS1
- Chain O
- uS15
- Chain S
- eS17
- Chain b
- eS26
- Chain c
- eS27
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