IL_7SYX_061

3D structure

PDB id

7SYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the delta dII IRES eIF5B-containing 48S initiation complex, closed conformation. Structure 15(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UUGGCGA*UUGUACA

Length

14 nucleotides

Bulged bases

7SYX|1|2|G|1207, 7SYX|1|2|A|1695

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYX|1|2|U|1202
7SYX|1|2|U|1203
7SYX|1|2|G|1204
7SYX|1|2|G|1205
7SYX|1|2|C|1206
7SYX|1|2|G|1207
7SYX|1|2|A|1208
*
7SYX|1|2|U|1691
7SYX|1|2|U|1692
7SYX|1|2|G|1693
7SYX|1|2|U|1694
7SYX|1|2|A|1695
7SYX|1|2|C|1696
7SYX|1|2|A|1697

Current chains

Chain 2

18S rRNA

Nearby chains

Chain D

uS5

Chain b

eS26

Chain z

Internal ribosome entry site; IRES