IL_7SYX_070

3D structure

PDB id

7SYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the delta dII IRES eIF5B-containing 48S initiation complex, closed conformation. Structure 15(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

7SYX|1|2|A|1489

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYX_070 not in the Motif Atlas

Geometric match to IL_4WF9_006

Geometric discrepancy: 0.2364

The information below is about IL_4WF9_006

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

129

Unit IDs

7SYX|1|2|C|1337
7SYX|1|2|G|1338
*
7SYX|1|2|C|1488
7SYX|1|2|A|1489
7SYX|1|2|G|1490

Current chains

Chain 2

18S rRNA

Nearby chains

Chain D

uS5

Chain E

uS3

Chain V

uS10

Chain e

eS29

Chain z

Internal ribosome entry site; IRES