IL_7SYX_079

3D structure

PDB id

7SYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the delta dII IRES eIF5B-containing 48S initiation complex, closed conformation. Structure 15(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGGAUCG*CAUGAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYX_079 not in the Motif Atlas

Homologous match to IL_8C3A_469

Geometric discrepancy: 0.1221

The information below is about IL_8C3A_469

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_10092.1

Basepair signature

cWW-tSH-tSH-L-R-cWW-L-R-cWW

Number of instances in this motif group

1

Unit IDs

7SYX|1|2|G|1604
7SYX|1|2|G|1605
7SYX|1|2|G|1606
7SYX|1|2|A|1607
7SYX|1|2|U|1608
7SYX|1|2|C|1609
7SYX|1|2|G|1610
*
7SYX|1|2|C|1629
7SYX|1|2|A|1630
7SYX|1|2|U|1631
7SYX|1|2|G|1632
7SYX|1|2|A|1633
7SYX|1|2|A|1634
7SYX|1|2|C|1635

Current chains

Chain 2

18S rRNA

Nearby chains

Chain T

uS13

Chain U

eS19