IL_7SYX_090

3D structure

PDB id

7SYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the delta dII IRES eIF5B-containing 48S initiation complex, closed conformation. Structure 15(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GCC*GCGC

Length

7 nucleotides

Bulged bases

7SYX|1|2|C|1783

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYX_090 not in the Motif Atlas

Geometric match to IL_4YHW_001

Geometric discrepancy: 0.3815

The information below is about IL_4YHW_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

7SYX|1|2|G|1749
7SYX|1|2|C|1750
7SYX|1|2|C|1751
*
7SYX|1|2|G|1782
7SYX|1|2|C|1783
7SYX|1|2|G|1784
7SYX|1|2|C|1785

Current chains

Chain 2

18S rRNA

Nearby chains