IL_7SYX_096

3D structure

PDB id

7SYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the delta dII IRES eIF5B-containing 48S initiation complex, closed conformation. Structure 15(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UCUAAG*CUG

Length

9 nucleotides

Bulged bases

7SYX|1|2|A|60, 7SYX|1|2|A|61

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYX_096 not in the Motif Atlas

Homologous match to IL_8P9A_378

Geometric discrepancy: 0.2863

The information below is about IL_8P9A_378

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61299.6

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

4

Unit IDs

7SYX|1|2|U|57
7SYX|1|2|C|58
7SYX|1|2|U|59
7SYX|1|2|A|60
7SYX|1|2|A|61
7SYX|1|2|G|62
*
7SYX|1|2|C|86
7SYX|1|2|U|87
7SYX|1|2|G|88

Current chains

Chain 2

18S rRNA

Nearby chains

Chain F

eS4

Chain H

eS6

Chain Z

40S ribosomal protein S24