IL_7SYX_097

3D structure

PDB id

7SYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the delta dII IRES eIF5B-containing 48S initiation complex, closed conformation. Structure 15(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUUAU*ACGUC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYX_097 not in the Motif Atlas

Geometric match to IL_7VYX_008

Geometric discrepancy: 0.3411

The information below is about IL_7VYX_008

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_71154.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

17

Unit IDs

7SYX|1|2|G|108
7SYX|1|2|U|109
7SYX|1|2|U|110
7SYX|1|2|A|111
7SYX|1|2|U|112
*
7SYX|1|2|A|349
7SYX|1|2|C|350
7SYX|1|2|G|351
7SYX|1|2|U|352
7SYX|1|2|C|353

Current chains

Chain 2

18S rRNA

Nearby chains

Chain F

eS4

Chain J

eS8

Chain M

uS17