IL_7SYX_103

3D structure

PDB id

7SYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the delta dII IRES eIF5B-containing 48S initiation complex, closed conformation. Structure 15(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GACAGGAUUGACAG*CUUUCUCGAUUC

Length

26 nucleotides

Bulged bases

7SYX|1|2|G|1285, 7SYX|1|2|C|1292

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYX|1|2|G|1281
7SYX|1|2|A|1282
7SYX|1|2|C|1283
7SYX|1|2|A|1284
7SYX|1|2|G|1285
7SYX|1|2|G|1286
7SYX|1|2|A|1287
7SYX|1|2|U|1288
7SYX|1|2|U|1289
7SYX|1|2|G|1290
7SYX|1|2|A|1291
7SYX|1|2|C|1292
7SYX|1|2|A|1293
7SYX|1|2|G|1294
*
7SYX|1|2|C|1305
7SYX|1|2|U|1306
7SYX|1|2|U|1307
7SYX|1|2|U|1308
7SYX|1|2|C|1309
7SYX|1|2|U|1310
7SYX|1|2|C|1311
7SYX|1|2|G|1312
7SYX|1|2|A|1313
7SYX|1|2|U|1314
7SYX|1|2|U|1315
7SYX|1|2|C|1316

Current chains

Chain 2

18S rRNA

Nearby chains

Chain L

eS10

Chain N

eS12

Chain Q

uS19

Chain e

eS29

Chain g

40S ribosomal protein S27a