IL_7TM3_008

3D structure

PDB id

7TM3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD Rhodopsin intermediate in complex with the multipass translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.25 Å

Loop

Sequence

AU*AAAUGU

Length

8 nucleotides

Bulged bases

7TM3|1|K|U|150

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TM3_008 not in the Motif Atlas

Homologous match to IL_8C3A_007

Geometric discrepancy: 0.1221

The information below is about IL_8C3A_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_19724.3

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

4

Unit IDs

7TM3|1|K|A|121
7TM3|1|K|U|122
*
7TM3|1|K|A|147
7TM3|1|K|A|148
7TM3|1|K|A|149
7TM3|1|K|U|150
7TM3|1|K|G|151
7TM3|1|K|U|152

Current chains

Chain K

28S ribosomal RNA

Nearby chains

Chain G

60S ribosomal protein L7a

Chain N

Ribosomal protein L15

Chain v

5.8S ribosomal RNA; 5.8S rRNA