3D structure

PDB id
7TM3 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the rabbit 80S ribosome stalled on a 2-TMD Rhodopsin intermediate in complex with the multipass translocon
Experimental method
ELECTRON MICROSCOPY
Resolution
3.25 Å

Loop

Sequence
GUC*GC
Length
5 nucleotides
Bulged bases
7TM3|1|K|U|200
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7TM3_013 not in the Motif Atlas
Homologous match to IL_8C3A_013
Geometric discrepancy: 0.1829
The information below is about IL_8C3A_013
Detailed Annotation
Single bulged U
Broad Annotation
No text annotation
Motif group
IL_83039.19
Basepair signature
cWW-L-cWW
Number of instances in this motif group
123

Unit IDs

7TM3|1|K|G|199
7TM3|1|K|U|200
7TM3|1|K|C|201
*
7TM3|1|K|G|214
7TM3|1|K|C|215

Current chains

Chain K
28S ribosomal RNA

Nearby chains

Chain Y
uL24

Coloring options:


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