IL_7TM3_033

3D structure

PDB id

7TM3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD Rhodopsin intermediate in complex with the multipass translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.25 Å

Loop

Sequence

CCCG*CCCG

Length

8 nucleotides

Bulged bases

7TM3|1|K|C|738, 7TM3|1|K|C|738|||A, 7TM3|1|K|C|924, 7TM3|1|K|C|925

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TM3_033 not in the Motif Atlas

Geometric match to IL_5J7L_341

Geometric discrepancy: 0.2214

The information below is about IL_5J7L_341

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42626.2

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

7TM3|1|K|C|737
7TM3|1|K|C|738
7TM3|1|K|C|738|||A
7TM3|1|K|G|739
*
7TM3|1|K|C|923
7TM3|1|K|C|924
7TM3|1|K|C|925
7TM3|1|K|G|926

Current chains

Chain K

28S ribosomal RNA

Nearby chains

Chain M

60S ribosomal protein L14