IL_7TM3_044

3D structure

PDB id

7TM3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD Rhodopsin intermediate in complex with the multipass translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.25 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TM3_044 not in the Motif Atlas

Geometric match to IL_4KZD_002

Geometric discrepancy: 0.1843

The information below is about IL_4KZD_002

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

7TM3|1|K|C|1431
7TM3|1|K|G|1432
7TM3|1|K|A|1433
7TM3|1|K|G|1434
*
7TM3|1|K|C|1450
7TM3|1|K|G|1451
7TM3|1|K|A|1452
7TM3|1|K|G|1453

Current chains

Chain K

28S ribosomal RNA

Nearby chains

Chain Q

eL18