IL_7TM3_065

3D structure

PDB id

7TM3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD Rhodopsin intermediate in complex with the multipass translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.25 Å

Loop

Sequence

CGC*GG

Length

5 nucleotides

Bulged bases

7TM3|1|K|G|1815

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TM3_065 not in the Motif Atlas

Geometric match to IL_4V88_442

Geometric discrepancy: 0.3262

The information below is about IL_4V88_442

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

49

Unit IDs

7TM3|1|K|C|1814
7TM3|1|K|G|1815
7TM3|1|K|C|1816
*
7TM3|1|K|G|1823
7TM3|1|K|G|1824

Current chains

Chain K

28S ribosomal RNA

Nearby chains

Chain D

Ribosomal_L18_c domain-containing protein

Chain T

eL21

Chain b

eL29