IL_7TM3_083

3D structure

PDB id

7TM3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD Rhodopsin intermediate in complex with the multipass translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.25 Å

Loop

Sequence

GAGUGG*CGC

Length

9 nucleotides

Bulged bases

7TM3|1|K|G|2546

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TM3_083 not in the Motif Atlas

Geometric match to IL_4WF9_041

Geometric discrepancy: 0.3147

The information below is about IL_4WF9_041

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_76400.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

7TM3|1|K|G|2542
7TM3|1|K|A|2543
7TM3|1|K|G|2544
7TM3|1|K|U|2545
7TM3|1|K|G|2546
7TM3|1|K|G|2547
*
7TM3|1|K|C|2772
7TM3|1|K|G|2773
7TM3|1|K|C|2774

Current chains

Chain K

28S ribosomal RNA

Nearby chains

Chain k

60S ribosomal protein L38

Chain v

5.8S ribosomal RNA; 5.8S rRNA