IL_7TM3_088

3D structure

PDB id

7TM3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD Rhodopsin intermediate in complex with the multipass translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.25 Å

Loop

Sequence

CAG*CGUG

Length

7 nucleotides

Bulged bases

7TM3|1|K|U|2687

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TM3_088 not in the Motif Atlas

Geometric match to IL_4V9F_076

Geometric discrepancy: 0.2427

The information below is about IL_4V9F_076

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_87316.1

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

12

Unit IDs

7TM3|1|K|C|2646
7TM3|1|K|A|2647
7TM3|1|K|G|2648
*
7TM3|1|K|C|2685
7TM3|1|K|G|2686
7TM3|1|K|U|2687
7TM3|1|K|G|2688

Current chains

Chain K

28S ribosomal RNA

Nearby chains

Chain g

60S ribosomal protein L34