IL_7TM3_104

3D structure

PDB id

7TM3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD Rhodopsin intermediate in complex with the multipass translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.25 Å

Loop

Sequence

GAAUG*CGC

Length

8 nucleotides

Bulged bases

7TM3|1|K|A|3711

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TM3_104 not in the Motif Atlas

Homologous match to IL_8C3A_092

Geometric discrepancy: 0.3392

The information below is about IL_8C3A_092

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_58579.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

7TM3|1|K|G|3710
7TM3|1|K|A|3711
7TM3|1|K|A|3712
7TM3|1|K|U|3713
7TM3|1|K|G|3714
*
7TM3|1|K|C|3739
7TM3|1|K|G|3740
7TM3|1|K|C|3741

Current chains

Chain K

28S ribosomal RNA

Nearby chains