IL_7TM3_109

3D structure

PDB id

7TM3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD Rhodopsin intermediate in complex with the multipass translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.25 Å

Loop

Sequence

GAA*UACC

Length

7 nucleotides

Bulged bases

7TM3|1|K|A|3901, 7TM3|1|K|C|4560

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TM3_109 not in the Motif Atlas

Homologous match to IL_8C3A_097

Geometric discrepancy: 0.11

The information below is about IL_8C3A_097

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_54678.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

7TM3|1|K|G|3900
7TM3|1|K|A|3901
7TM3|1|K|A|3902
*
7TM3|1|K|U|4558
7TM3|1|K|A|4559
7TM3|1|K|C|4560
7TM3|1|K|C|4561

Current chains

Chain K

28S ribosomal RNA

Nearby chains

Chain P

uL22

Chain w

uL3