IL_7TM3_121

3D structure

PDB id

7TM3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD Rhodopsin intermediate in complex with the multipass translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.25 Å

Loop

Sequence

GCU*GAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TM3_121 not in the Motif Atlas

Geometric match to IL_5TBW_103

Geometric discrepancy: 0.1142

The information below is about IL_5TBW_103

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

7TM3|1|K|G|4401
7TM3|1|K|C|4402
7TM3|1|K|U|4403
*
7TM3|1|K|G|4440
7TM3|1|K|A|4441
7TM3|1|K|U|4442

Current chains

Chain K

28S ribosomal RNA

Nearby chains

Chain I

60S ribosomal protein L10

Chain b

eL29

Chain w

uL3