IL_7TM3_124

3D structure

PDB id

7TM3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD Rhodopsin intermediate in complex with the multipass translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.25 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TM3_124 not in the Motif Atlas

Homologous match to IL_8C3A_114

Geometric discrepancy: 0.1051

The information below is about IL_8C3A_114

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65585.1

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

7TM3|1|K|C|4412
7TM3|1|K|C|4413
7TM3|1|K|A|4414
7TM3|1|K|A|4415
7TM3|1|K|G|4416
*
7TM3|1|K|C|4426
7TM3|1|K|G|4427
7TM3|1|K|A|4428
7TM3|1|K|C|4429
7TM3|1|K|G|4430

Current chains

Chain K

28S ribosomal RNA

Nearby chains

Chain I

60S ribosomal protein L10

Chain m

eL40