IL_7TM3_133

3D structure

PDB id

7TM3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD Rhodopsin intermediate in complex with the multipass translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.25 Å

Loop

Sequence

CCAU*AGGCG

Length

9 nucleotides

Bulged bases

7TM3|1|K|C|4720

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TM3_133 not in the Motif Atlas

Geometric match to IL_5J7L_256

Geometric discrepancy: 0.3246

The information below is about IL_5J7L_256

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

7TM3|1|K|C|4582
7TM3|1|K|C|4583
7TM3|1|K|A|4584
7TM3|1|K|U|4585
*
7TM3|1|K|A|4717
7TM3|1|K|G|4718
7TM3|1|K|G|4719
7TM3|1|K|C|4720
7TM3|1|K|G|4721

Current chains

Chain K

28S ribosomal RNA

Nearby chains

Chain O

uL13

Chain w

uL3