IL_7TM3_154

3D structure

PDB id

7TM3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD Rhodopsin intermediate in complex with the multipass translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.25 Å

Loop

Sequence

UCU*AAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TM3_154 not in the Motif Atlas

Geometric match to IL_6OL3_002

Geometric discrepancy: 0.1371

The information below is about IL_6OL3_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

7TM3|1|q|U|2
7TM3|1|q|C|3
7TM3|1|q|U|4
*
7TM3|1|q|A|69
7TM3|1|q|A|70
7TM3|1|q|A|71

Current chains

Chain q

P-site tRNA

Nearby chains

Chain I

60S ribosomal protein L10

Chain K

Large subunit ribosomal RNA; LSU rRNA